Changelog

Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

Unreleased

0.1.8 - 2025-12-18

🚀 Features

🐛 Bug Fixes

📚 Documentation

🔧 Maintenance

đŸ’„ Breaking Changes

  • No breaking changes

Full Changelog: https://github.com/shawntz/fmriprep-workbench/compare/v0.1.7
v0.1.8

0.1.7 - 2025-12-18

🚀 Features

🐛 Bug Fixes

📚 Documentation

🔧 Maintenance

đŸ’„ Breaking Changes

  • No breaking changes

Full Changelog: https://github.com/shawntz/fmriprep-workbench/compare/v0.1.6
v0.1.7

0.1.6 - 2025-12-18

🚀 Features

🐛 Bug Fixes

📚 Documentation

🔧 Maintenance

đŸ’„ Breaking Changes

  • No breaking changes

Full Changelog: https://github.com/shawntz/fmriprep-workbench/compare/v0.1.5
v0.1.6

0.1.5 - 2025-12-18

🚀 Features

🐛 Bug Fixes

📚 Documentation

🔧 Maintenance

đŸ’„ Breaking Changes

  • No breaking changes

Full Changelog: https://github.com/shawntz/fmriprep-workbench/compare/v0.1.4
v0.1.5

0.1.4 - 2025-12-18

🚀 Features

🐛 Bug Fixes

📚 Documentation

🔧 Maintenance

đŸ’„ Breaking Changes

  • No breaking changes

Full Changelog: https://github.com/shawntz/fmriprep-workbench/compare/v0.1.3
v0.1.4

0.1.3 - 2025-12-18

🚀 Features

🐛 Bug Fixes

📚 Documentation

🔧 Maintenance

đŸ’„ Breaking Changes

  • No breaking changes

Full Changelog: https://github.com/shawntz/fmriprep-workbench/compare/v0.1.2
v0.1.3

0.1.2 - 2025-12-17

🚀 Features

🐛 Bug Fixes

📚 Documentation

🔧 Maintenance

đŸ’„ Breaking Changes

  • No breaking changes

Full Changelog: https://github.com/shawntz/fmriprep-workbench/compare/v0.1.1
v0.1.2

0.1.1 - 2025-12-17

🚀 Features

🐛 Bug Fixes

Fix: Add parameter configs for diagnostic toolbox options 9 and 10

📚 Documentation

🔧 Maintenance

đŸ’„ Breaking Changes

  • No breaking changes

Full Changelog: https://github.com/shawntz/fmriprep-workbench/compare/v0.1.0
v0.1.1

0.1.0 - 2025-12-17

🚀 Features

  • feat(01-prepare): add core prepare_fmri.sh script

  • feat(01-prepare): add core update_fmap_metadata.py script

  • feat(01-prepare): add core submit_job.sbatch executable

  • feat(fmriprep): test scripts

  • feat: gracefully skip missing bold runs instead of quitting

  • feat: add dynamic subject txt files to pipeline steps

  • feat: add new pull_fmriprep_reports utility script in the new tools/ directory

  • feat(TUI): add interactive launcher component

  • feat: frontend work on flywheel downloader utility script

  • feat: add changelog, release workflow automation, and ReadTheDocs integration

🐛 Bug Fixes

📚 Documentation

  • docs: add README for documentation directory

🔧 Maintenance

  • chore: update gitignore

  • chore: update LICENSE

  • chore: add contributing guidelines

  • chore(readme): add first complete draft with info and instructions

  • chore(README): fix markdown table formatting issues

  • chore: relocate job submitter script

  • chore: update settings template

  • chore: clean up slurm args in submit_01.sbatch

  • chore: rename sbatch run file

  • chore: clean up INFO logs in 01-run.sbatch

  • chore: clean up log messages in prepare_fmri.sh

  • chore: make update_fmap_metadata.py executable

  • chore: update logging methods

  • chore: restructure subjects.txt files

  • chore: update values in settings.template.sh

  • chore: restructure subjects template file

  • chore: update subjects txt file approach

  • chore: add new log statements

  • chore: update readme

  • chore: update 01-run.sbatch

  • chore: update 02-run.sbatch

  • chore: update README.md

  • chore: lint prepare_fmri.sh

  • chore: fix #5

  • chore: lint fmriprep.sh

  • refactor: migrate fw-downloader to independent step

  • refactor(sbatch): run scripts

  • refactor(launch): window with new options

đŸ’„ Breaking Changes

  • No breaking changes

Full Changelog: https://github.com/shawntz/fmriprep-workbench/compare/v0.0.0
v0.1.0

Added

  • Automated release workflow with version and changelog generation

  • Conventional commits support for automatic versioning

  • ReadTheDocs configuration for documentation hosting

1.0.0 - 2024-12-17

Added

  • Initial release of SML fMRI preprocessing template

  • Automated transfer of scanner acquisitions from FlyWheel to Server

  • Raw to BIDS format conversion support

  • dcm2niix DICOM to NIfTI converter integration

  • Dummy scan removal functionality

  • Fieldmap-based susceptibility distortion correction setup for fMRIPrep

  • fMRIPrep anatomical workflow support

  • Interactive TUI launcher for pipeline steps

  • Configuration templates and examples

  • Quality control utilities

  • BIDS metadata management tools

  • Subject ID suffix modifiers for granular per-subject control

  • Comprehensive documentation and usage guides

Features

  • Fieldmap-based distortion correction

  • Dummy scan removal

  • BIDS-compliance validation

  • JSON metadata management

  • Quality control checks

  • Slurm workload manager integration

  • Configurable preprocessing pipelines